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Table 4 Genes involved in the molecular function of the up regulated genes

From: Genetic profile of Egyptian hepatocellular-carcinoma associated with hepatitis C virus Genotype 4 by 15 K cDNA microarray: Preliminary study

Molecular Fuction

Gene No.

Gene Name

Protein Binding

28

MICA, SIPA1L1, SIN3A, VPS8, BTBD1, FBLN2, SUDS3, SYK, ARNT, RNF2, MYRIP, RIPK2, CBLB, SURF5, PHF3, NOTCH4, TNKS, LSM2(Bac-Bax), PSCD1, CBX3, MNAT1, RXPAP, FGFR1, ICEBERG(caspase-1-inhibitor), POP7, SMAD6, MYCBP2(MYC binding protein-2), SP110

Nucleotide binding

16

ABCG2, TNRC6B, SYK, MAP4K4, ATP6VIA, SPEN, MARK4, CUGBP2, CDK7, RAB14, MATR3, ATP2C1, FGFR1, RBM25, DYRK2, RIPK2

Metal ion binding

16

CHN1, RNF2, ADAMTS7, TCEA1, ATP6V1A, PLOD1, VPS8, PHF3, MYCBP2, MNAT1, MATR3, SP110, ZNF77, MYRIP, ZNF202, RXRA

Zinc ion binding

16

CHN1, RNF2, ADAMTS7, TCEA1, CBLB, VPS8, PHF3, MYCBP2, MNAT1, MATR3, SP110, ZNF77, MYRIP, ZNF202, MMP23B, RXPA

ATP binding

11

ABCG2, SKY, MAP4K4, ATP6V1A, MARK4, CDK4, DHX36, ATP2C1, FGFR1, DYRK2, RIPK2

Transferase activity

11

SYK, MAP4K4, HS2ST1, LYPLA3, MARK4, CDK7, FGFR1, DYRK2, RIPK2, GSTM4, TKT

Molecular Function unknown

10

WFDC1, FETUB, GPM6B, UBQLN4, PHF3, SURF5, PRCC, ZNF77, SIPA1L1, RXRA

Nucleic acid binding

9

EIF5A2, SND1, SPEN, POP7, LOC643641, MATR3, DHX36, RBM25, ZNF202

Calcium ion binding

9

GAS6, RCN1, CBLB, PPP3R1, FBLN2, ATP2C1, TKT, NOTCH4, CAPS

Hydrolase activity

7

LYPLA3, ITPA, TATDN2, POP7, DHX36, ATP6VIA, ATP2C1

DNA binding

6

SP110, TCEA1, SOX30, RNF2, ZNF77, SPEN

RNA binding

6

FNBP1, AKAP1, MATR3, LSM2, SPEN, CUGBP2