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Table 3 Number of validated genes of two serial dilutions of 3 cDNA samples before and after their preamplification.

From: Multiplex preamplification of specific cDNA targets prior to gene expression analysis by TaqMan Arrays

 

Initial cDNA

 

25 ng of preamplified cDNA

Sample number

N° validated genes (CT ≤ 31)

N° validated genes with ΔΔCT outside ± 1.5

r

 

NPA samples

PA samples

  

2

39

46

4

0.978

11

41

46

3

0.956

22

40

45

1

0.968

ng cDNA/port

500

15000

  

Dilution 1/20 of the initial cDNA

 

1.25 ng of preamplified cDNA

Sample number

N° validated genes (CT ≤ 31)

N° validated genes with ΔΔCT outside ± 1.5

r

 

NPA samples

PA samples

  

2

14

38

6

0.972

11

22

40

2

0.967

22

6

39

5

0.988

ng cDNA/port

25

750

  

Dilution 1/400 of the initial cDNA

 

0.06 ng of preamplified cDNA

Sample number

N° validated genes (CT ≤ 31)

N° validated genes with ΔΔCT outside ± 1.5

r

 

NPA samples

PA samples

  

2

3

17

0

0.962

11

2

27

3

0.883

22

3

20

2

0.932

ng cDNA/port

1.25

37.5

  
  1. Legend/key: The number of each sample corresponds to the "sample number" indicated in Table 2. CT, Cycle Threshold; NPA, Non-Preamplified; PA, Preamplified.