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Table 1 Summary of results from cDNA microarray and qPCR data analysis

From: Analysis of gene expression patterns by microarray hybridization in blood mononuclear cells of SLA-DRB1 defined Canadian Yorkshire pigs

 

MICROARRAY

qPCR

Gene

Fold-change a

Ratiob

p-value c

Fold-change a

Ratio

p-value

Comparison A: SLA-DRB1 alleles 0502/04ns01

TLR2

2.76

1.468

< 0.0001

3.10

1.65

0.0586

CCL4

2.10

1.075

0.0010

3.27

1.71

0.2880

IL1B

3.21

1.683

0.0025

14.72

3.88

0.0322

Comparison B: SLA-DRB1 alleles 0502/0701

SLA-DQA

2.46

1.303

0.0038

1.8

0.85

0.3569

CCL4

2.41

1.271

0.0158

3.55

1.83

0.2926

IL1B

3.57

1.837

0.0079

3.1

1.64

0.4168

Comparison C: SLA-DRB1 alleles 0701/04ns01

CASP1

1.79

0.840

0.0010

3.56

1.83

0.0651

SLA-DQA

-2.52

-1.335

0.0035

2.02

1.02

0.4667

  1. a Fold change = 2 (Log-ratio) or (-1) 2 (Log-ratio); b Median of the lowess-normalized log-ratio of intensity; c p-value with FDR correction for multiple comparisons.