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Table 2 Prediction accuracies delivered by alternative predictors with the 62 protein chains shorter than 100 residues extracted from the EVA server.

From: Prediction of protein secondary structures with a novel kernel density estimation based classifier

 

Q3

Q3H_O

Q3H_P

Q3E_O

Q3E_P

Q3C_O

Q3C_P

SOV

SOVH

SOVE

SOVC

Prote2S

75.1%

73.1%

79.4%

69.7%

73.7%

85.3%

70.6%

69.4%

74.7%

71.8%

72.4%

Errsig

1.5%

3.5%

3.6%

4.4%

4.7%

1.6%

2.2%

2.5%

3.5%

4.3%

2.1%

PSIPRED

77.0%

78.4%

80.3%

69.8%

76.9%

77.5%

77.7%

73.2%

75.4%

72.1%

72.6%

Errsig

1.6%

3.9%

3.2%

4.3%

3.9%

1.8%

2.0%

2.2%

3.9%

4.3%

2.2%

PROFsec

76.4%

78.0%

82.4%

75.8%

69.7%

79.6%

74.0%

72.9%

79.7%

77.7%

71.0%

Errsig

1.5%

3.1%

3.2%

3.5%

4.4%

1.6%

1.9%

2.2%

3.1%

3.5%

2.3%

PHDpsi

75.6%

82.7%

76.1%

70.4%

67.5%

75.4%

77.2%

70.2%

79.4%

72.0%

69.1%

Errsig

1.7%

3.1%

3.6%

4.1%

4.7%

1.9%

1.9%

2.4%

3.3%

4.1%

2.5%

SABLE2

76.3%

76.1%

76.4%

71.3%

61.2%

80.7%

74.8%

71.5%

77.1%

72.1%

71.0%

Errsig

1.6%

3.6%

4.0%

4.1%

5.0%

1.4%

2.0%

2.3%

3.7%

4.2%

2.2%

PROF_king

72.5%

67.4%

83.5%

72.6%

66.6%

79.9%

70.1%

65.8%

67.2%

72.8%

68.5%

Errsig

1.7%

4.1%

3.3%

4.2%

4.7%

1.6%

2.3%

2.5%

4.2%

4.4%

2.4%