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Table 1 Percentage of probe usage after re-annotation

From: Salvaging Affymetrix probes after probe-level re-annotation

Organism

GeneChip

Affymetrix

Brainarray [1]

AffyProbe-Miner * [3]

Hybrid

H. sapiens**

HG-U133_Plus_2

604,258

40%

56%

94%

M. musculus

Mouse430_2

496,468

49%

56%

94%

R. norvegicus

Rat230_2

342,410

40%

29%

94%

B. taurus

Bovine

265,627

44%

29%

93%

D. rerio

Zebrafish

249,752

39%

46%

88%

  1. * Gene Consistent RefSeq plus GenBank, min. probe-set size = 5.
  2. ** GeneAnnot [2]: 58% probe usage.