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Table 1 Primer and probe sequences

From: Differential susceptibility of PCR reactions to inhibitors: an important and unrecognised phenomenon

Reaction

Oligoδ

Sequence

Pj HSP70a

F

CGTCTTGTAAACCACTTCATTGC

 

R

AGTCCGTTTAGCACGCTCAC

 

P

HEX 5' AAGA AA GA TCTT TCAG GG 3' BHQ1*

mtLSU133

F

GCACTGAATATCTCGAGGGA

 

R

ACTGTTCTGGGCTGTTTCC

 

P

HEX 5' CTT ATC GCA CAT AGT CTG ATT 3'BHQ1*

CFP32

F

AGAAGCGAATACAGGCAAGG

 

R

CGGACTGATCGGTGGTCT

 

P

HEX 5' CGCCGAACTGGGTCGACCTTC 3' BHQ1

IS1081

F

CTGCTCTCGACGTTCATCGCCG

 

R

GGCACGGGTGTCGAAATCACG

 

P

HEX 5' ATTGGACCGCTCATCGCTGCGTTCGC 3' BHQ1

16S MTb

F

CAAGTCGAACGGAAAGGTCT

 

R

GCAGATCACCCACGTGTTAC

 

P

HEX 5' CCCGTTCGCCACTCGAGTATCTC 3' BHQ1

SPUD

F

AACTTGGCTTTAATGGACCTCCA

 

R

ACATTCATCCTTACATGGCACCA

 

P

FAM 5'TGCACAAGCTATGGAACACCACGT 3' BHQ1

  1. n.b. δ Oligos; F: forward primer, R: reverse primer, P: hydrolysis probe.
  2. * underline denotes locked nucleic acid (LNA) moieties