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Table 3 Protein domains in RGAs and R genes that are predicted by InterProScan

From: Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny

Predicted Protein Domain

Species

Sequence Name

NB-ARC, LRR, RPW8, DISEASERSIST

Arabidopsis

AT5G66900

 

Arabidopsis

AT5G66910

 

Fragaria

34E24_7

 

Populus

proteinId_563015

 

Medicago

CU137666_10.3

NB-ARC, LRR, RPW8

Vitis

GSVIVP00003147001

NB-ARC, LRR, DISEASERSIST

Populus

proteinId_76151

 

Populus

proteinId_76161

 

Medicago

CU013515_11.5

 

Medicago

CU013515_34.5

 

Medicago

AC135229_1.5

 

Medicago

AC135229_5

 

Medicago

AC135229_9.5

NB-ARC, LRR

Medicago

AC148525_12

 

Medicago

AC148525_17

 

Vitis

GSVIVP00003149001

 

Vitis

GSVIVP00003151001

 

Vitis

GSVIVP00004841001

 

Prunus

PP_LEa_1_Contig1043

NB-ARC, RPW8

Vitis

GSVIVP00004840001

 

Vitis

GSVIVP00004842001

NB-ARC

Medicago

CU013515_31.5

LRR, RPW8, DISEASERSIST

Populus

proteinId_76154*

DISEASERSIST

Fragaria

34E24_5*

RPW8

Fragaria

34E24_3*

 

Arabidopsis

AT5G66630*

LRR

Arabidopsis

AT5G66890

 

Fragaria

34E24_4

 

Populus

proteinId_563014

  1. *Contains characteristic motifs of NBS domain