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Table 2 Results of experimental scoring of probes.

From: A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina

Metrics

Rejected probes

Qualified probes

CDS with probes

Probe-deficient CDSa

SSR, SBR

2,013 (4.8%)

39,830 (95.2%)

10,327 (98.8%)

123 (1.2%)

CV

900 (2.1%)

40,943 (97.9%)

10,325 (95.2%)

125 (1.2%)

Mprobe and Marrayb

25,140 (60%)

16,480 (39.4%)

10,180 (97.4%)

140 (1.3%)

  1. a these CDS have had all of their probes rejected based only on one single metric. The combination of the three metrics resulted in more probe-deficient CDS (717) than the sum of probe-deficient CDS excluded because of a single criterion.
  2. b these metrics apply only to CDS with more than two probes. Therefore 223 probes, targeted to CDS with less than three probes, were excluded from this analysis.