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Figure 1 | BMC Research Notes

Figure 1

From: KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data

Figure 1

Genome-wide plot of the KC scores of a Nimblegen mouse data set (Klijn C, et al. Unpublished data 2008) using a kernel width of 1 Mb, the red dotted line indicates the significance threshold determined using an alpha cut-off of 0.05. A large gain on chromosome 9 and the loss of chromosome 12 clearly stand out, reflecting both the strength and the frequency of the respective gain and loss. b) Scale space plot, showing the significant regions on chromosomes 7, 10 and 17 for four different kernel widths where the color indicates the level of significance (ranging from red to yellow where red indicates highly significant aberrations and yellow less significant aberrations).

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