Skip to main content

Table 1 Haplotype-tagging markers genotyped in PRNP gene region.

From: Association analysis of PRNP gene region with chronic wasting disease in Rocky Mountain elk

Marker

dbSNP accession

Sequence variant

Minor Allele

Minor Allele Frequency (%)

Impact on PRNP

1

ss115456950

g.371T > C1

C

15.1

 

2

ss115456954

g.986A > G1

G

15.3

 

3

ss119994796

g.598T > C2

T

23.4

 

4

ss119994799

g.655C > T2

T

1.3

 

5

ss119994806

g.918A > G2

G

14.8

 

6

ss119994811

g.1131C > G2

G

13.4

 

7

ss119994818

g.1456C > G2

G

8.0

 

8

ss119994819

g.1477C > T2

T

23.5

 

9

ss119994821

g.1591T > C2

C

13.9

 

10

ss119994830

g.17361G > A2

A

23.9

 

11

ss119994833

g.17918T > G2

T

24.3

 

12

ss119994840

g.18059C > T2

T

22.4

Silent4

13

ss119994835

g.18308G > A2

G

8.5

Silent4

14

ss119994836

g.18390A > T2

T

13.4

L132M4

15

ss115456958

g.3C > T3

C

13.3

 

16

ss115456962

g.152T > C3

T

21.9

 

17

ss115456969

g.1104C > T3

C

8.3

 

18

ss119994818, ss119994835

g.1456C > G2, g.18308G > A2

CG

8.5

 

19

ss119994818, ss119994819

g.1456C > G2, g.1477C > T2

CT

23.3

 

20

ss115456954, ss119994833, ss119994836

g.986A > G1, g.17918T > G2, g.18390A > T2

GTT

11.6

 

21

ss119994796, ss119994806

g.598T > C2, g.918A > G2

CA

23.6

 

22

ss119994796, ss119994806

g.598T > C2, g.918A > G2

TG

14.3

 
  1. 1Nucleotide positions in reference to GenBank:FJ590753.
  2. 2Nucleotide positions in reference to GenBank:FJ590751.
  3. 3Nucleotide positions in reference to GenBank:FJ590752.
  4. 4Deduced amino acid substitution.