Variations in CCL3L gene cluster sequence and non-specific gene copy numbers

BMC Research Notes

Table 1 Specificity of primer and probes sets used in different HIV/AIDS and other disease association studies of CCL3L-related CNVs and mRNA expression.

#	Primer/Probe Sequences 5'-3' Sequence*	References		Specificity
		HIV/AIDS	Other diseases
CCL3L_PP1	F: TCTCCACAGCTTCCTAACCAAGA	[3, 4],	[6]^a	CCL3L1
	R: CTGGACCCACTCCTCACTGG	[5, 9],	[7]^b	CCL3L3
	P: AGGCCGGCAGGTCTGTGCTGA	[10, 17],	[8]^c
		[22, 23],	[21]^d
		[24, 25]	[32]^e
		[26, 27],
		[28, 29],
		[30, 31]
CCL3L_PP2	F: TTCTGGACCCACTCCTCACT	[12]		CCL3L1
	R: CTTCTCCACAGCTTCCTAACCA			CCL3L3
	P: FAM-CTGCCGGCCTCTCT
CCL3L_PP3	F: TGCCTATCTCCGTCTAGAGAGCTT	[13]		CCL3L1
	R: AGAAGGAGGCAGCAGGACACT	[33]		CCL3L2
	P: FAM-TGACTCCAGGCAAGGG-MGB			CCL3L3
CCL3L_PP4	F: GGGTATGACTTCTTGAACCGACAAA	[1]		CCL3L1
	R: GGTTCTCTGTTTCTCTATGTGATCCA			CCL3L3
	P: 6FAM-CATGAAGAGAGCTAAGAGAAC-MGBNFQ
mRNA expression
CCL3L_PP5	F: TCTGCAACCAGGTCCTCTCT		[34]^f	CCL3L1
	R: TTTCTGGACCCACTCCTCAC			CCL3L3
CCL3L_PP6	F:AGCCCTGAACAAAGCATCTG		[35]^g	CCL3L1
	R:TGAGAGTTCCCCCTGTCCCCT			CCL3L3
Non-Human
	F: CCAGTGCTTAACCTTCCTCC
CCL3L_PP7	R: TCAGGCACTCAGCTCCAGGT	[11]
	P: AGGCCGGCAGGTCTGTGCTGACC

* F = forward primer, R = Reverse primer, P = probe ^a SLE; ^bRheumatoid arthritis; ^cKawasaki disease;^d type 1 diabetes mellitus; ^e hepatitis C; ^fHuman glioblastoma; ^gDendritic cells exposed to contact allergens and irritants

ISSN: 1756-0500