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Table 1 Overview of samples included in this study

From: Opening the archives for state of the art tumour genetic research: sample processing for array-CGH using decalcified, formalin-fixed, paraffin-embedded tissue-derived DNA samples

Sample ID

Diagnosis

Collection date

Material

Cellularity

Extracellular matrix

Decalcification

1

Rare chondrosarcoma

2004

dFFPE

High

Low

Formic acid

2

Rare chondrosarcoma

2007

dFFPE

High

Low

Formic acid

3

Rare chondrosarcoma

2007

dFFPE

Low

High

Formic acid

4

Rare chondrosarcoma

1996

dFFPE

Low

High

Formic acid

5

Rare chondrosarcoma

1997

dFFPE

High

Low

Formic acid

6

Rare chondrosarcoma

2005

dFFPE

Low

High

Formic acid

7

Rare chondrosarcoma

2005

dFFPE

High

Low

Formic acid

8

Rare chondrosarcoma

2004

dFFPE

Moderate

Moderate

Formic acid

9

Rare chondrosarcoma

2006

dFFPE

Moderate

Moderate

Formic acid

10

Rare chondrosarcoma

2000

dFFPE

Moderate

Moderate

Formic acid

11

Rare chondrosarcoma

1996

dFFPE

Moderate

Moderate

Formic acid

12

Rare chondrosarcoma

NA

dFFPE

High

Moderate

Formic acid

13

Rare chondrosarcoma

NA

dFFPE

High

Moderate

Formic acid

14

Rare chondrosarcoma

1994

dFFPE

High

Moderate

Formic acid

15

Rare chondrosarcoma

NA

dFFPE

High

Moderate

Formic acid

16

Rare chondrosarcoma

2007

dFFPE

High

Moderate

Formic acid

17

Rare chondrosarcoma

NA

dFFPE

High

Moderate

Formic acid

18

Rare chondrosarcoma

2001

dFFPE

High

Moderate

Formic acid

19

Rare chondrosarcoma

1994

dFFPE

High

Moderate

Formic acid

20

Rare chondrosarcoma

1996

dFFPE

High

Moderate

Formic acid

21*

Rare chondrosarcoma

2000

Frozen

Moderate

Moderate

None

22**

Rare chondrosarcoma

1996

Frozen

Moderate

Moderate

None

23

Chondrosarcoma

2001

Frozen

High

High

None

24

Chondrosarcoma

2003

Frozen

low

High

None

25

Primary angiosarcoma

2007

Frozen

High

Low

None

26

Primary angiosarcoma

NA

dFFPE

High

Low

Formic acid

27

Primary angiosarcoma

2007

dFFPE

High

Low

Formic acid

28

Primary angiosarcoma

2007

FFPE

High

Low

None

29

Primary angiosarcoma

NA

FFPE

High

Low

None

30

Primary angiosarcoma

2007

FFPE

High

Low

None

31

Primary angiosarcoma

NA

dFFPE

High

Low

Formic acid

32

Chondrosarcoma

1990

dFFPE

Low

High

Formic acid

  1. * Corresponding frozen sample Nr 10.
  2. ** Corresponding frozen sample Nr 11.
  3. ***NA: not available