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Table 1 DNA sequences of primers and probes directed against three IS elements and the internal control Phocine Herpes Virus (PhHV).

From: A real-time PCR assay with improved specificity for detection and discrimination of all clinically relevant Bordetella species by the presence and distribution of three Insertion Sequence elements

Template

Primer/probe (label)

Sequence (5'-3')

IS 481

Forward primer

GCCGGATGAACACCCATAAG

 

Reverse primer

GCGATCAATTGCTGGACCAT

 

Probe (FAM)

CGATTGACCTTCCTACGTC-MGB

IS 1001

Forward primer

AATTGCTGCAAGCCAACCA

 

Reverse primer

CCAGAGCCGTTTGAGTTCGT

 

Probe (VIC)

ACATAGACCGTCAGCAG-MGB

IS 1002

Forward primer

CTAGGTCGAGCCCTTCTTGTTAAC

 

Reverse primer

GCGGGCAAGCCACTTGTA

 

Probe (CY5)

CATCGTCCAGTTCTGTTGCATCACCC-BBQ

PhHV

Forward primer

GGGCGAATCACAGATTGAATC

 

Reverse primer

GCGGTTCCAAACGTACCAA

 

Probe (NED)

TTTTTATGTGTCCGCCACCA-MGB