Skip to main content
Figure 1 | BMC Research Notes

Figure 1

From: BUDDY-system: A web site for constructing a dataset of protein pairs between ligand-bound and unbound states

Figure 1

Example of a protein structure pair between ligand-bound and unbound states. (a) A ligand-bound state structure of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) ([PDB:1HQ2]) and (b) an unbound state structure ([PDB:1IM6]). The ligand is represented by dark spheres. The BUDDY-system allows users to search for this type of pair by its ligand as a search query, bound states and ligands by its unbound state, and unbound states from its bound state. The user can input 1 query or a set of such queries as a dataset.

Back to article page