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Table 5 Overall ranking order of candidate reference genes based on the output values from three programs and selection of the best genes in the intervertebral disc of Sprague-Dawley (SD) rat and New Zealand White (NZW) rabbit

From: Selection of reference genes for normalization of quantitative real-time PCR in organ culture of the rat and rabbit intervertebral disc

SD rat

Actb

GAPDH

18S rRAN

CycA

Hprt1

Ywhaz

Pgk1

Best genes

geNorm

1.515

0.498

1.268

0.498

0.664

2.040

2.406

 

NormFinder

0.947

0.931

0.755

0.788

0.541

1.482

1.417

Hprt1 and CycA

BestKeeper

1.23

0.66

1.05

0.69

0.35

2.22

2.25

 

Average

1.23

0.70

1.02

0.66

0.52

1.91

2.02

 

Rank

5

3

4

2

1

6

7

 

NZW rat

Actb

GAPDH

18S rRAN

CycA

Hprt1

Ywhaz

Pgk1

Best genes

geNorm

0.414

0.903

0.803

0.484

0.565

0.414

0.698

 

NormFinder

0.478

0.699

0.511

0.227

0.371

0.497

0.374

 

BestKeeper

0.53

1.12

0.90

0.36

0.23

0.64

0.43

CycA Hprt1 and Actb

Average

0.47

0.91

0.74

0.36

0.39

0.52

0.50

 

Rank

3

7

6

1

2

5

4

 

rat & rabbit

Actb

GAPDH

18S rRAN

CycA

Hprt1

Ywhaz

Pgk1

Best genes

geNorm

1.427

0.854

1.217

0.598

0.598

2.081

1.804

 

NormFinder

0.658

0.956

0.596

0.636

0.514

0.783

0.808

 

BestKeeper

0.97

0.85

1.23

0.68

0.30

1.12

1.01

Hprt1 and CycA

Average

1.02

0.89

1.01

0.64

0.47

1.33

1.21

 

Rank

5

3

4

2

1

7

6

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