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Table 2 Statistically Significant SNPs Identified in Extrapulmonary Tuberculosis Cases vs. PPD + Controls

From: Novel human genetic variants associated with extrapulmonary tuberculosis: a pilot genome wide association study

SNP

Rank

P-value

MAF in ETB

MAF in PPD +

Odds Ratio

Chromosome

Gene

Closest Gene

Distance to Gene

rs4893980

1

0.0007

0.1087

0.4902

0.1268

2

PDE11A

---

---

rs10487416

2

0.0007

0.25

0.0566

5.556

7

unknown

unknown

unknown

rs10488286

3

0.0009

0.2381

0.02727

11.15

7

KCND2

---

---

rs2026414

4

0.0009

0.5208

0.2589

3.111

10

PCDH15

---

---

  1. Empirical P - value cutoff from permutation testing = 0.0009
  2. The p - value reported is the raw value.
  3. MAF = Minor Allele Frequency
  4. ETB = Extrapulmonary tuberculosis
  5. PPD + = Purified protein derivative positive
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BMC Research Notes

ISSN: 1756-0500

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