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Table 4 Statistically Significant SNPs Identified in Extrapulmonary Tuberculosis Cases vs. Pulmonary Tuberculosis Controls

From: Novel human genetic variants associated with extrapulmonary tuberculosis: a pilot genome wide association study

SNP

Rank

P-value

MAF in ETB

MAF in PTB

Odds Ratio

Chromosome

Gene

rs340708

1

0.0008

0.4375

0.125

5.444

8

FAM135B

rs1886870

2

0.0009

0.6667

0.25

6

13

RP11-141M1

  1. Empirical P-value cutoff from permutation testing = 0.0009
  2. The p-value reported is the raw value.
  3. MAF = Minor Allele Frequency
  4. ETB = Extrapulmonary tuberculosis
  5. PTB = Pulmonary tuberculosis
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BMC Research Notes

ISSN: 1756-0500

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