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Table 1 CV(RMSD) for whole gene templates plus a 2000 bp intergenic overhang

From: Quantification of histone modification ChIP-seq enrichment for data mining and machine learning applications

Mark

CV(RMSD)

 

Non-Iterative

Iterative

H2AZ

3.382

4.442

H2BK5me1

1.940

1.957

H3K27me1

1.973

1.970

H3K27me2

2.960

2.957

H3K27me3

2.599

2.601

H3K36me1

2.919

2.913

H3K36me3

1.793

1.838

H3K4me1

2.007

1.943

H3K4me2

2.366

2.310

H3K4me3

2.955

3.189

H3K79me1

1.812

1.806

H3K79me2

1.820

1.802

H3K79me3

1.798

1.795

H3K9me1

1.861

1.810

H3K9me2

3.046

3.055

H3K9me3

4.114

4.550

H3R2me1

2.524

2.521

H3R2me2

3.581

3.575

H4K20me1

1.497

1.489

H4K20me3

5.871

8.112

H4R3me2

3.175

3.174

  1. The CV(RMSD) shows the fit of template models to the enrichment data. The first column shows the mark. The second column shows the CV(RMSD) for the non-iterative template. The third column shows the CV(RMSD) for the iterative template. The CV(RMSD) is improved (lowered) by the iterative template over the non-iterative template in 13 of the 21 marks.