From: Towards a TILLING platform for functional genomics in Piel de Sapo melons
Gene/population | Amplicon size (bp) | Identified mutants | N°1 | Exon/Intron | Position | AA change | M2 Family | M2 segregation (WT/H/M)2 | SIFT score |
---|---|---|---|---|---|---|---|---|---|
Cm-eIF4E/PS | 500 | 1 | 1 | Exon 1 | A 74 G | R 25 K | F2036 | 9/7/8 | 0.00 |
1169 | 3 | 2 | Exon 2 | G 385 A | E 129 K | F57 | 5/3/0 | 0.00 | |
3 | Exon 2 | G 465 A | T 155 T | F1880 | |||||
4 | Intron 2 | G/C | F959 | ||||||
Cm-eIF4E/CH | 500 | 3 | 5 | Exon 1 | G 289 A | E 97 K | 53 | 0.02 | |
6 | Exon 1 | C 294 T | F 98 F | 2532 | |||||
7 | Intron 1 | G/A | 1420 | ||||||
1169 | 11 | 8 | Exon 2 | C 401 T | A 134 V | 1229 | 0.10 | ||
9 | Exon 2 | G 407 A | G 136 E | 444 | 0.00 | ||||
10 | Intron 2 | C/A | 1287 | ||||||
11 | Intron 2 | C/T | 1115 | ||||||
12 | Intron 3 | G/A first nt of intron | splicing | 1667 | |||||
13 | Intron 3 | C/T | 2646 | ||||||
14 | Intron 3 | C/T | 1233 | ||||||
15 | Exon 4 | G 616 A | E 206 K | 2060 | 0.09 | ||||
16 | Intron 4 | C/T | 2035 | ||||||
17 | 3'UTR | T/C | 1368 | ||||||
18 | 3'UTR | G/A | 2163 | ||||||
222 TGA | |||||||||
CmeIF(iso)4E/PS | 1014 | 0 | - | ||||||
CmeIF(iso)4E/CH | 1014 | 1 | 19 | Exon 1 | G 128 A | R 43 K | M1587 | 1.00 | |
Cm-PDS/PS | 1188 | 2 | 20 | Intron 1 | C/T | F1151 | 4/7/4 | ||
21 | Exon 2 | C 560 T | S 227 F | C384 | 6/9/0 | 0.00 | |||
Cm-PDS/CH | 1188 | 4 | 22 | Exon 1 | C 395 T | S 172 F | 1182 | 0.01 | |
23 | Intron 1 | C/T | 2495 | ||||||
24 | Intron 1 | T/C | 1460 | ||||||
25 | Intron 1 | C/T | 1226 | ||||||
Cm-ACO1/PS | 933 | 0 | - | ||||||
933 | 1 | 26 | Exon 4 | C 728 T | T 243 I | C142 | 10/6/3 | 1.00 | |
Cm-NOR/PS | 1272 | 0 | |||||||
Cm-DET1/PS | 1185 | 1 | 27 | Exon 2 | T 402 A | L 135 L | I76 | ||
776 | 2 | 28 | Exon 4 | G 760 A | V 255 I | F201 | 2/11/2 | 0.37 | |
29 | Exon 4 | C 848 T | S 284 L | F1876 | 2/4/3 | 0.25 | |||
1232 | 2 | 30 | Intron 6 | G 2981 A | F1248 | ||||
31 | Intron 7 | C 3211 T | C487 | ||||||
Cm-DHS/PS | 578 | 1 | 32 | Exon 1 | G 184 A | V 62 I | F 1728 | 13/20/0 | 0.58 |
754 | 1 | 33 | Exon 3 | G 610 A | V 204 I | C348 | 2/6/0 | 0.27 |