Skip to main content

Table 1 The list of gene name annotated by Gene Ontology based on the homologous protein entries in the public databases

From: Comparison of RNA expression profiles on generations of Porphyra yezoensis (Rhodophyta), based on suppression subtractive hybridization (SSH)

Gene symbol

Full Name

vegetative cells

carpospores

NeoTet

pNeo4 NeoTet

 

√

fglh1

lysyl hydroxylase 1

 

√

response regulator

response regulator

 

√

sensor histidine kinase

sensor histidine kinase

 

√

Peb1

response regulator Rr1 genes

 

√

rr1

response regulator Rr1

 

√

 

sigma-54 DNA-binding response regulator

√

 
 

sigma 54 modulation protein

√

 

RPL41

ribosomal protein L41

√

√

RPL27A

ribosomal protein L27A

√

 

RPL30

ribosomal protein L30

 

√

RPL23a

ribosomal protein L23a

√

 

RPL9

ribosomal protein L9

√

√

RPS3

ribosomal protein S3

 

√

RPS11

ribosomal protein S11

√

√

EEF1A1

eukaryotic translation elongation factor 1 alpha 1

 

√

RSIP

ribosomal subunit interface protein

√

 

GTP1/OBG family

translation-associated GTPase

√

 

RNA helicase

DEAD-box ATP dependent DNA helicase

√

 

Snf2 family protein

Snf2 family protein-related Helicase

√

 

tRNA synthase

tRNA pseudouridine synthase

√

 

RecQ

ATP-dependent DNA helicase RecQ

√

 

MutT

putative mutator protein

√

 

NUDIX hydrolase

MutT/nudix family protein

√

 

uvrA

excinuclease ABC, subunit A

√

 

integrase

Transposase from transposon Tn916

 

√

 

DNA-directed RNA polymerase subunit

 

√

recF

recombination protein F

 

√

RadA

DNA repair protein

 

√

hsdM

type I restriction enzyme M protein

 

√

RE

restriction endonuclease

 

√

GidA

tRNA uridine 5-carboxymethylaminomethyl

modification enzyme

√

 

GidA

glucose-inhibited division protein A

√

 

fruA/fruB

frutan hydrolase (fruA), FruB (fruB)

√

 

ek435

cyplasin S

 

√

hsp68

heat shock protein 68

√

 

hrcA

repressor of heat shock gene expression HrcA

√

 

dnaK

molecular chaperone DnaK

√

 

grpE

molecular chaperone

√

 

PUM1

pumilio 1

√

 

CYTH2

cytohesin 2

 

√

CBX7

protein binding

 

√

PSCD2

pleckstrin homology, Sec7 and coiled domains 2

 

√

APOBEC3A

  

√

Acac

nucleolin-related protein, transcript variant

 

√

INHBA

inhibin beta A

 

√

RBM9

RNA binding motif protein 9

 

√

SLC25A5L

solute carrier family 25

 

√

PAX1

paired box gene 1

 

√

E1BP1

  

√

g6pd

glucose-6-phosphate-1-dehydrogenase

 

√

thiol peroxidase

thiol peroxidase

√

 

SOD1

superoxide dismutase 1

 

√

BTG1

B-cell translocation gene 1, anti-proliferative

 

√

ORFA

  

√

ctc

  

√

aab

aromatic amino acid biosynthetic gene cluster

 

√

Ndfip1

Nedd4 family interacting protein 1

√

 

RGS7

regulator of G-protein signalling 7

√

 

LAPTM4A

lysosomal-associated protein transmembrane 4α

√

 

ABC transporter

putative osmoprotectant ABC transporter

√

√

nitrite transporter

nitrite transporter

√

 

p76

Transmembrane 9 superfamily

member 2 precursor

 

√

IBP

iron-binding protein genes

 

√

eep

  

√

EF2015

minor head protein

√

 

HAD

HAD superfamily hydrolase

√

 

methyltransferase

putative methyltransferase

√

 

carboxylesterase

carboxylesterase

 

√

Gfo/Idh/MocA

family oxidoreductase

 

√

SEPHCHC synthase

carboxylic acid synthase

 

√

PTS system

phosphotransferase system

 

√

SAG0894 family

CRISPR associated protein

 

√

SecY

preprotein translocase subunit SecY

√

 

signal peptidase I

signal peptidase I

 

√

clpC

stress response-related Clp protease

√

 

NDUFA9

NADH dehydrogenase (ubiquinone) 1 alpha

 

√

ATP citrate synthase

ATP citrate synthase

 

√

ATP citrate lyase

ATP citrate lyase

 

√

atpA/B/C/D/E/F/G/H

H+ ATPase subunits

√

 

COX4I1

cytochrome c oxidase subunit IV isoform 1

 

√

pykF

pyruvate kinase

 

√

Rmet_0948

ubiquinol oxidase, subunit II

 

√

FH

fumarate hydratase

√

 

ADPGlc Ppase

Glucose-1-phosphate adenylyltransferase

 

√

glycerol dehydrogenase

glycerol dehydrogenase

 

√

dapB

dihydrodipicolinate reductase

 

√

cmk

Cytidine monophosphate kinase

 

√

arcABCRD

arginine deiminase operon

 

√

argR1/argR2

arginine repressors

 

√

pI

  

√

h1

  

√

NGLY1

N-glycanase 1

 

√

prs

phosphoribosyl pyrophosphate synthetase

 

√

ldh

L-lactate dehydrogenase

 

√

gcaD

UDP-N-acetylglucosamine pyrophosphorylase

 

√

ghfp

glycosy hydrolase family protein

√

 

EF2591

glyoxalase family protein

 

√

adk

adenylate kinase(AK)

√

 

YgfK

pyridine nucleotide-disulfide family

√

 

ApbE

thiamin biosynthesis ApbE

√

 

IPP isomerase

phosphomevalonate kinase

√

 

Gelsolin precursor

Gelsolin precursor

 

√

IVNS1ABP

influenza virus NS1A binding protein

 

√

holin

holin

√

 

psbO1

oxygen-evolving enhancer 1 precursor

√

 

PBP 1B

membrane carboxypeptidase

 

√

MDRP

multidrug resistance protein

 

√

MFSP

major facilitator superfamily protein

 

√