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Table 1 Characteristics of 24 polymorphic microsatellite loci in Zatorska geese population

From: Applicability of anatid and galliform microsatellite markers to the genetic diversity studies of domestic geese (Anser anser domesticus) through the genotyping of the endangered zatorska breed

Locus

GenBank Accesion No.

Source species

Repeat motif of sequenced clone

Primer sequence (5'-3')

Ref.

T a

N

A

Allele size range (bp)

RS

PIC

H O

H E

P HWE

Null allele freq.

PE

PI

Chromosome, location (bp) (E-value)

Aal μ1

U63689

Anser albifrons

TG

F: CATGCGTGTTTAAGGGGTAT

R: TAAGACTTGCGTGAGGAATA

11

55

96

4

81-91

1.29

0.21

0.16

0.23

0.012

0.151

0.203

0.612

No match

APH12

AJ515893

Anas platyrhynchos domesticus

(GAAA)4A2 (GAAA)2

F: TTAGTAGCATGTCAGGTTTATT

R: GCTTGTAGACTTCAGAGTTC

22

58

96

2

155-157

1.81

0.35

0.34

0.45

0.033

-0.131

0.265

0.405

Gga2, 130340088 (5.0E-98)

APH13

AJ515894

Anas platyrhynchos domesticus

(GA)10

F: CAACGAGTGACAATGATAAAA

R: CAATGATCTCACTCCCAATAG

22

55

96

2

163-165

1.85

0.35

0.36

0.46

0.027

0.133

0.268

0.398

Gga7, 4082663 (9.0E-56)

APH16

AJ515897

Anas platyrhynchos domesticus

(CA)7

F: CCTTCTGAACCTTCGTAG

R: AAATATAGACTTTTGTCCTGAA

22

58

96

2

144-148

1.94

0.37

0.38

0.48

0.219

0.086

0.277

0.382

Gga4, 36804087 (7.0E-21)

APH20

AJ515901

Anas platyrhynchos domesticus

(CA)9

F: ACCAGCCTAGCAAGCACTGT

R: GAGGCTTTAGGAGAGATTGAAAAA

22

60

96

4

140-150

1.94

0.45

0.48

0.49

0.363

0.006

0.436

0.304

Gga8, 2546006 (3.0E-56)

Bca μ1

AF025889

Branta canadensis

(TA)15 (CA)10

F: TGCTTTTTACCCCCAGTGTTCT

R: AGAATCTGCTATATTATTTCCAGCTC

18

61

96

5

115-125

3.81

0.69

0.59

0.74

0.000

0.123

0.677

0.114

Gga12, 4593760 (3.0E-08)

Bca μ5

AF025893

Branta canadensis

(CA)9

F: AGTGTTTCTTTCATCTCCACAAGC

R: AGACCACAATCGGACCACATATTC

18

62

96

2

197-201

1.06

0.05

0.06

0.05

1.000

-0.006

0.051

0.895

Gga1, 74604866 (6.0E-40)

Bca μ6

AF025894

Branta canadensis

(CA)10

F: TTTAACCCAGTAGCCTATCATGTCA

R: GTCTGAAGATAATGCTGCATGGTT

18

60

96

2

141-149

1.18

0.14

0.15

0.16

0.496

0.023

0.127

0.727

Gga2, 55974019 (3.0E-63)

Bca μ7

AF025895

Branta canadensis

(CA)7N5 (CA)7 (TTTA)4

F: TAGTTTCTATTTGCACCCAATGGAG

R: CGGTCCTGTCCTTGTGCTGTAA

18

61

96

2

171-175

1.11

0.10

0.09

0.10

0.225

0.084

0.090

0.812

Gga2, 30816660 (1.0E-14)

Bca μ8

AF025896

Branta canadensis

(CA)8

F: CCCAAGACTCACAAAACCAGAAAT

R:ATGAAAGAAGAGTTAAACGTGTGCAA

18

58

96

4

155-159

2.52

0.52

0.47

0.61

0.003

0.132

0.471

0.238

No match

Bca μ9

AF025897

Branta canadensis

(CA)9

F: CCCAGTTCCTCTCATTCTCCTT

R: AAACAGGGAGGTGAAAGTGCTT

18

61

96

3

104-116

2.03

0.41

0.48

0.51

0.782

0.023

0.339

0.340

Gga7, 22851442 (4.0E-11)

Bca μ10

AF025898

Branta canadensis

(CA)9

F: ATGTAGCCATGAAAATTAAAAAATG

R: CCAGTATTAGCCGAAAAGATGA

18

60

96

2

102-104

1.66

0.32

0.29

0.40

0.008

0.165

0.247

0.441

Gga2, 111179712 (3.0E-09)

CAUD-G007

AY493252

Anas platyrhynchos domesticus

(CAG)5 (GCA)5

F: ACTTCTCTTGTAGGCATGTCA

R: CACCTGTTGCTCCTGCTGT

17

61

96

3

116-122

1.32

0.23

0.24

0.25

0.558

0.008

0.217

0.587

No match

CAUD-G012

AY493257

Anas platyrhynchos domesticus

(AC)10

F: ATTGCCTTTCAGTGGAGTTTC

R: CGGCTCTAAACACATGAATG

17

57

96

3

203-211

2.11

0.44

0.53

0.53

0.656

0.006

0.372

0.313

GgaU, NW_ 001477064.1 (1.0E-11)

CAUD-G013

AY493258

Anas platyrhynchos domesticus

(AC)9

F: ACAATAGATTCCAGATGCTGAA

R: ATGTCTGAGTCCTCGGAGC

17

61

96

2

92-98

1.42

0.25

0.32

0.30

0.726

-0.036

0.205

0.542

Gga13, 14041755 (0.009)

CKW5

AY720919

Anser cygnoides

AC

F: CAAAGCCCGTCATAGCA

R: AAGTTTCGGTCTGGATTGA

21

57

96

2

236-240

1.03

0.03

0.03

0.03

1.000

-0.002

0.031

0.938

Gga3, 50882942 (2.0E-32)

CKW14

AY720927

Anser cygnoides

(CCT)5

F: AACTGATCCGGCAGAAAACTAA

R: ACTTAGCATGCAGCTTCACAAA

9

60

96

2

221-223

1.77

0.34

0.48

0.44

0.348

-0.054

0.260

0.414

Gga17, 4593759 (4.0E-33)

CKW18

AY720929

Anser cygnoides

(CAAAA)7

F: AATGTGCTGTGTCACATTCTCC

R: CATCATCCAACGATTCAGACAT

9

57

96

2

246-250

1.76

0.34

0.41

0.43

0.638

0.022

0.259

0.416

Gga4, 52015193 (1.0E-22)

CKW21

-

Anser cygnoides

(TTA)10

F: CAAGGTAGTCATAAACCCAGAACA

R: ACAAAACTAATGGCAGGAAAC

21

62

96

6

346-375

2.87

0.59

0.45

0.66

0.000

0.193

0.571

0.182

Gga1, 2666911 (2.0E-64)

CKW43

AY790340

Anser cygnoides

(CA)11

F: TCCAAGGCTTACTTCCCAAG

R: CAGAAGACAGGCCTGCAAAT

9

62

20(M)

2

129-131

1.84

0.35

0.68

0.46

0.047

-0.215

-

-

GgaZ, 9308527

       

76 (F)

2

129-131

1.94

0.37

0.00

0.49

0.000

0.999

-

-

(0.008)

CKW47

AY790335

Anser cygnoides

(T)8(TG)7

F: AACTTCTGCACCTAAAAACTGTCA

R: TGCTGAGGTAACAGGAATTAAAA

9

62

96

2

213-215

1.13

0.11

0.12

0.11

1.000

-0.022

0.099

0.792

Gga4, 68269490 (4.0E-13)

TTUCG1

U66089

Branta canadensis

CA

F: CCCTGCTGGTATACCTGA

R: GTGTCTACACAACAGC

25,35

58

96

2

113-115

1.32

0.21

0.28

0.24

0.351

-0.072

0.179

0.605

Gga11, 13347684 (1.0E-11)

TTUCG2

U66090

Branta canadensis

GT

F: GAGAGCGTTACTCAGCAAA

R: TCACTCTGAGCTGCTACAACA

211, 25,35

55

96

2

112-128

1.92

0.36

0.52

0.48

0.518

-0.037

0.275

0.386

No match

TTUCG5

U66093

Branta canadensis

TCTAT

F: GGGTGTTTTCCAACTCAG

R: CACTTTCCTTACCTCATCTT

212, 25,35

61

96

7

176-216

2.35

0.55

0.55

0.58

0.242

0.012

0.569

0.209

Gga1, 269486597 (6.0E-04)

  1. Ref., References; Ta, annealing temperature; n, number of individuals genotyped; A, number of alleles; RS, allelic richness; PIC, polymorphism information content; HO observed heterozygosity; HE expected heterozygosity; PHWE, Hardy-Weinberg equilibrium test P-value; PE, probability of exclusion; PI, probability of identity; M, males; F, females.
  2. 1under the name WD136
  3. 2under the name WD206