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Table 2 Comparison between ClustalW2 and simple sorted alignment strategies in all configurations

From: Effect of positional dependence and alignment strategy on modeling transcription factor binding sites

Species

ClustalW2

Superior

 Z 

 p≤ 

 

  % Cases

Alignment

  

D. melanogaster

         0.980

ClustalW2

5.78

0.01

G. gallus

         0.000

Simple sorted

6.03

0.01

H. sapiens

         0.540

None

0.50

–

M. musculus

         0.060

Simple sorted

5.28

0.01

R. norvegicus

         1.000

ClustalW2

6.03

0.01

S. cerevisiae

         0.125

Simple sorted

4.53

0.01