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Table 3 Class-wise performance of ngLOC method on eukaryotic datasets

From: ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes

  

Animal

Plant

Localization class

Code

Prec.

Sens.

Spec.

MCC

Prec.

Sens.

Spec.

MCC

Cytoplasm

CYT

0.818

0.750

0.983

0.762

0.864

0.832

0.991

0.838

Cytoskeleton

CSK

0.937

0.784

0.998

0.853

0.988

0.965

1.000

0.976

Endoplasmic Reticulum

END

0.970

0.785

0.999

0.869

0.876

0.645

0.999

0.748

Extracellular

EXC

0.953

0.946

0.974

0.922

0.966

0.723

0.999

0.831

Golgi Apparatus

GOL

0.940

0.593

1.000

0.745

1.000

0.509

1.000

0.712

Lysosome

LYS

0.949

0.693

1.000

0.810

    

Mitochondria

MIT

0.979

0.852

0.998

0.906

0.912

0.727

0.995

0.804

Nuclear

NUC

0.805

0.914

0.960

0.831

0.769

0.873

0.976

0.802

Plasma Membrane

PLA

0.876

0.957

0.961

0.890

0.796

0.866

0.989

0.822

Peroxisome

POX

0.946

0.760

1.000

0.847

0.906

0.580

1.000

0.724

Cell Junction

JNC

0.774

0.387

1.000

0.547

    

Chloroplast

CHL

    

0.946

0.977

0.899

0.889

Vacuole

VAC

    

0.844

0.702

0.998

0.766

% Overall accuracy

    

89.88%

   

91.39%

  1. Prec-precision; Sens-sensitivity; Spec-specificity; MCC-Matthews correlation coefficient.