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Table 1 Indexing times and disk sizes

From: BetaSearch: a new method for querying β-residue motifs

 

Dataset size

Method

1,000

2,000

4,000

8,000

16,000

GraphGrepSX,l p =4

27s

57s

1m 44s

3m 29s

7m 43s

 

2Mb

4Mb

9Mb

18Mb

37Mb

GraphGrepSX,l p =10

49s

1m 44s

3m 31s

7m 09s

14m 50s

 

75 Mb

142 Mb

267 Mb

496 Mb

925 Mb

SING,l p =4

34s

1m 11s

2m 17s

4m 29s

9m 12s

 

10 Mb

21 Mb

42 Mb

84 Mb

169 Mb

SING,l p =10

4m 05s

8m 25s

16m 26s

32m 16s

1h 04m 39s

 

329 Mb

636 Mb

1187 Mb

2243 Mb

4279 Mb

BetaSearch

9s

19s

56s

2m 03s

4m 04s

 

10 Mb

20 Mb

40 Mb

81 Mb

164 Mb

  1. The indexing times and disk sizes (italics) of each method. Indexing times were measured as the average over five repetitions. Disk sizes were measured using the POSIX “stat” command.