From: BIGrat: a repeat resolver for pyrosequencing-based re-sequencing with Newbler
Reference 1 | Assembly method | Genome size (bp) | Contig length (bp) | Contig number | Contig NG50 2 | Contig LG50 3 | Gap-filling number 4 | Gap-filling length 4 |
---|---|---|---|---|---|---|---|---|
Rice PA64S nuclear | BWA-SW | 372,317,567 | 328,243,169 | 55,092 | 17,903 | 4,534 | \ | \ |
Newbler | Â | 353,856,308 | 61,922 | 19,383 | 5,351 | \ | \ | |
Newbler-BIGrat | Â | 362,123,475 | 41,838 | 28,677 | 3,671 | 20,084 | 8,267,167 | |
Acinetobacter baumannnii | BWA-SW | 3,991,133 | 3,681,865 | 133 | 101,163 | 14 | \ | \ |
Newbler | Â | 3,684,532 | 119 | 128,034 | 12 | \ | \ | |
Newbler-BIGrat | Â | 3,717,247 | 104 | 173,210 | 9 | 15 | 32,715 | |
Rice PA64S mt | BWA-SW | 490,673 | 405,286 | 5 | 234,879 | 1 | \ | \ |
Newbler | Â | 273,171 | 104 | 1,022 | 13 | \ | \ | |
Newbler-BIGrat | Â | 464,774 | 1 | 464,774 | 1 | 103 | 191,603 | |
Rice PA64S cp | BWA-SW | 134,551 | 133,024 | 3 | 58,368 | 2 | \ | \ |
Newbler | Â | 113,344 | 56 | 81,038 | 1 | \ | \ | |
Newbler-BIGrat | Â | 134,156 | 1 | 134,156 | 1 | 55 | 20,812 |