Table 1 Output files produced by the MetabR program
From: MetabR: an R script for linear model analysis of quantitative metabolomic data
Output | File type |
|---|---|
Normalized data | CSV |
Normalized data with technical replicates averaged | CSV |
A plot of the model residuals for each metabolite vs. each metabolite’s overall mean signal | |
A plot of the model residuals for each metabolite vs. each metabolite’s overall mean signal, expanded to accommodate metabolite labels | |
Mean plots for all significant metabolites | CSV |
Tukey HSD p-values for all treatment group comparisons for every metabolite | CSV |
q-values for all treatment group comparisons for every metabolite | CSV |
Mean fold-changes between all treatment group comparisons for every metabolite | CSV |
Plots of all confounding variables vs. all metabolite measurements, pre- and post-normalization | |
Heat map and dendrogram of the normalized data | |
Spreadsheet for direct upload to Pathway Projector | CSV |