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Table 3 Atypical R-domain combinations found in the UniGene PRGdb dataset

From: In silico approach to predict candidate R proteins and to define their domain architecture

Unigene ID

Resistance Class

Aty-R domain(s)

Species

At.43365

NBS-LRR-AtyR

Mob1

Arabidopsis thaliana

Os.24417

NBS-LRR-AtyR

Zinc finger, ZZ-type

Oryza sativa

Os.25168

NBS-AtyR

GTPase Containing Family

Oryza sativa

Os.25222

NBS-AtyR

Phosphatase 2C

Oryza sativa

Os.25268

NBS-AtyR

WRKY transcription factor; Gag-Pol-related Retrotransposon

Oryza sativa

Os.27097

NBS-AtyR

WRKY transcription factor

Oryza sativa

Os.78619

NBS-AtyR

Zinc finger, CCHC-type

Oryza sativa

Os.79969

NBS-AtyR

DUF1979

Oryza sativa

Os.93921

NBS-AtyR

Cecropin; Origin replication binding protein

Oryza sativa

Pth.15498

NBS-AtyR

Gag-Pol-related Retrotransposon

Populus trichocarpa

Pth.15636

NBS-AtyR

Zinc finger, BED-type

Populus trichocarpa

At.3076

TIR-LRR-NBS-KIN-Serthr-AtyR

Phenylalanine Hydroxylase (PAH); WRKY transcription factor

Arabidopsis thaliana

At.38115

TIR-AtyR

DUF541

Arabidopsis thaliana

At.51652

TIR-AtyR

Toll-IL-1 receptor domain-containing adapter protein (TIRAP)

Arabidopsis thaliana

Ghi.9199

TIR-AtyR

Toll-IL-1 receptor domain-containing adapter protein (TIRAP)

Gossypium hirsutum

Gma.3221

TIR-AtyR

Helix-loop-helix structural domain ( EF-HAND 2)

Glycine max

Vvi.2456

TIR-AtyR

Toll-IL-1 receptor domain-containing adapter protein (TIRAP)

Vitis vinifera

At.46853

TNL-AtyR

Pleckstrin homology domain (PH); Regulator of chromosome condensation

Arabidopsis thaliana

Pth.16040

TNL-AtyR

CALCINEURIN B

Populus trichocarpa

Pth.16041

TNL-AtyR

DNA-Directed RNA Polymerase II

Populus trichocarpa

Pth.16058

TNL-AtyR

Gag-Pol-related Retrotransposon

Populus trichocarpa

Han.34

TIR-NBS-AtyR

Steroid Binding Protein

Helianthus annuus

Psi.4721

TIR-NBS-AtyR

Toll-IL-1 receptor domain-containing adapter protein (TIRAP)

Picea sitchensis

  1. Sequences are divided according to the R domain and sorted by species.