Table 3 The proportion of SSRs motifs in maize genome
Motif | Total SSRs | Unique SSRs | Unique SSRs with polymorphisms | ||||||
|---|---|---|---|---|---|---|---|---|---|
Count | Length (bp) | Rate (%) | Count | Length (bp) | Rate (%) | Count | Length (bp) | Rate (%) | |
A/T | 32462 | 10.96 | 19.94 | 22640 | 10.92 | 29.18 | 14221 | 10.87 | 42.94 |
C/G | 39796 | 12.31 | 24.44 | 14597 | 13.14 | 18.81 | 6411 | 11.93 | 19.36 |
AT/TA | 20534 | 23.19 | 12.61 | 12169 | 13.26 | 15.68 | 3719 | 19.43 | 11.23 |
CG/GC | 2085 | 12.56 | 1.28 | 1115 | 12.77 | 1.44 | 157 | 13.17 | 0.47 |
AC/GT/CA/TG | 5153 | 14.05 | 3.16 | 3129 | 14.45 | 4.03 | 1318 | 15.61 | 3.98 |
AG/CT/TC/GA | 26070 | 15.63 | 16.01 | 10706 | 17.30 | 13.80 | 4735 | 18.83 | 14.30 |
AAC/GTT/TGT/ACA/CAA/TTG | 1389 | 17.93 | 0.85 | 1000 | 18.55 | 1.29 | 231 | 20.40 | 0.70 |
AAG/CTT/TTC/GAA/TCT/AGA | 4032 | 16.19 | 2.48 | 1263 | 16.90 | 1.63 | 316 | 18.13 | 0.95 |
AAT/ATT/TAA/TTA/TAT/ATA | 3378 | 23.13 | 2.07 | 1244 | 26.59 | 1.60 | 297 | 23.68 | 0.90 |
ACC/GGT/CAC/GTG/CCA/TGG | 3322 | 15.85 | 2.04 | 1193 | 16.18 | 1.54 | 165 | 17.58 | 0.50 |
ACG/CGT/GAC/GTC/CGA/TCG | 4244 | 17.23 | 2.61 | 1255 | 16.52 | 1.62 | 235 | 17.77 | 0.71 |
ACT/AGT/GTA/TAC/TAG/CTA | 1372 | 20.30 | 0.84 | 363 | 17.88 | 0.47 | 90 | 17.83 | 0.27 |
AGC/GCT/CTG/CAG/TGC/GCA | 8375 | 16.15 | 5.14 | 1773 | 16.33 | 2.28 | 364 | 17.27 | 1.10 |
AGG/CCT/GGA/TCC/CTC/GAG | 1981 | 16.98 | 1.22 | 1224 | 17.47 | 1.58 | 327 | 18.91 | 0.99 |
ATC/GAT/CAT/ATG/TCA/TGA | 4051 | 18.15 | 2.49 | 777 | 18.25 | 1.00 | 198 | 20.92 | 0.60 |
CCG/CGG/GGC/GCC/GCG/CGC | 4582 | 16.38 | 2.81 | 3146 | 16.66 | 4.05 | 334 | 17.72 | 1.01 |
Total | 162826 | 15.15 | 100 | 77594 | 13.94 | 100 | 33118 | 14.01 | 100 |