Table 1 Overview of the parameters for 3N and 4N
From: Inferring protein–protein interaction complexes from immunoprecipitation data
External for 3N | External for 4N | Affects totalnumber ofproteins incomplexes | Description | |
|---|---|---|---|---|
L | Yes | Yes | Length of topList | |
T | Yes | Yes | Co-occurrence thresholdinfluencing param. | |
C | Yes | Yes | Yes | Cosinus-distance threshold |
S | Yes | No | Yes | Jaccard coefficient threshold for building CCs |
U | No | Yes | Jacc. coeff. threshold forbuilding NNNs | |
P | Yes | No | Jaccard coefficient threshold for joining CCs |