Table 1 Number of jobs, average run time (in minutes), and maximum memory used (in GB) for the major steps of preprocessing
From: ASAP: an environment for automated preprocessing of sequencing data
| Â | 5 exomes | 2 whole genomes | ||||
|---|---|---|---|---|---|---|
| Â | # jobs | Average time | Maximum memory | # jobs | Average time | Maximum memory |
Alignment | 38 | 43.6 | 4.3 | 82 | 277.5 | 4.5 |
Realignment | 18 | 29.0 | 3.5 | 36 | 181.7 | 4.8 |
Recalibration | 80 | 7.0 | 3.3 | 32 | 109.3 | 2.9 |
SNP calling | 136 | 1.6 | 3.2 | 136 | 9.8 | 3.1 |
Annotation | 24 | 28.6 | 2.7 | 24 | 29.7 | 2.7 |
Total | 311 | Â | Â | 316 | Â | Â |