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Table 2 Pre-assembly and automatic functional prediction test

From: STINGRAY: system for integrated genomic resources and analysis

Organism

Genome size

SRA1

Sequencing technology

Total reads

N° of contigs

Time of pre-assembly6

Number of sequences with one GO-based annotations at least

       

MF2

BP3

CC4

WA5

E. coli K12

4,7 Mb

SRR001354

SOLiD

25162805

11011

30 min

1593

1577

1562

9328

N. meningitidis

2 Mb

ERR015596

Illumina

5418859

4815

3 h 4 min

1055

1055

995

2812

S. pneumoniae GA17457

2 Mb

SRR068304

454 GS FLX

252646

11317

2 h 52 min

5899

5942

5393

5340

P. papatasi

~170 Mb

SRR066482

454 Titanium

498629

9836

5 h 18 min

554

553

458

9993

  1. 1 - SRA: Sequence Read Archive.
  2. 2 - MF: Molecular Function.
  3. 3 - BF: Biological Process.
  4. 4 - CC: Cellular component.
  5. 5 - WA: Without annotation.
  6. 6 - Pre-assemblies were performed on Intel 8 Core Server (1860mHz) and 16Gb RAM.