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Table 3 Features comparison between Stingray and other annotation pipelines

From: STINGRAY: system for integrated genomic resources and analysis

Features

STINGRAY

RATT

Artemis

WEP

NGSPE

Preproccesing sequencing output data files

X

  

X

X

Proccesing Sanger output files

X

    

Proccesing NGS output files

X

  

X

X

Gene prediction

X

X

X

  

Similarity search blast

X

 

X

  

Similarity search Hmmer

X

 

X

  

Similarity search RPSBlast

X

 

X

  

Similarity search Interpro

X

    

Similarity search PSIBlast

X

    

Homologs identification

X

X

   

Phylogeny analysis

X

    

Codon usage analysis

X

    

tRNA prediction

X

    

Manual annotation

X

 

X

  

Semi-automatic annotation

X

    

Automatic annotation

X

X

 

X

X

Friendly interface

X

 

X

  

Web platform

X

  

X

 

Use of SGBD

X

  

X

 

Applet

  

X

  

Browse genome visualization

  

X

  

Jalview visualization

  

X

  

Generate GBFF file

X

 

X

  

Generate SeqIn file

X

 

X