From: STINGRAY: system for integrated genomic resources and analysis
Features | STINGRAY | RATT | Artemis | WEP | NGSPE |
---|---|---|---|---|---|
Preproccesing sequencing output data files | X | X | X | ||
Proccesing Sanger output files | X | ||||
Proccesing NGS output files | X | X | X | ||
Gene prediction | X | X | X | ||
Similarity search blast | X | X | |||
Similarity search Hmmer | X | X | |||
Similarity search RPSBlast | X | X | |||
Similarity search Interpro | X | ||||
Similarity search PSIBlast | X | ||||
Homologs identification | X | X | |||
Phylogeny analysis | X | ||||
Codon usage analysis | X | ||||
tRNA prediction | X | ||||
Manual annotation | X | X | |||
Semi-automatic annotation | X | ||||
Automatic annotation | X | X | X | X | |
Friendly interface | X | X | |||
Web platform | X | X | |||
Use of SGBD | X | X | |||
Applet | X | ||||
Browse genome visualization | X | ||||
Jalview visualization | X | ||||
Generate GBFF file | X | X | |||
Generate SeqIn file | X | X |