Table 2 Go term significantly represented in up-regulated and shoot-specific gene clusters

Up-regulated genes: 3138 (shoot vs. root)

Oxidation reduction

136

4.33%

1.10E-17

Photosynthesis

36

1.15%

1.56E-15

Photosynthesis, light harvesting

10

0.32%

2.70E-07

Pigment metabolic process

13

0.41%

6.27E-06

Pigment biosynthetic process

12

0.38%

9.67E-06

Photosynthesis, light reaction

12

0.38%

1.30E-05

Generation of precursor metabolites and energy

36

1.15%

5.09E-05

Fatty acid biosynthetic process

14

0.45%

0.00286

Fatty acid metabolic process

15

0.48%

0.004194

Electron transport chain

14

0.45%

0.006286

Aminoglycan metabolic process

7

0.22%

0.006382

Lipid biosynthetic process

21

0.67%

0.007102

Cellular aldehyde metabolic process

4

0.13%

0.007622

Lipid transport

12

0.38%

0.009804

Lipid localization

12

0.38%

0.009804

Shoot-specific genes: 438

Oxidation reduction

40

9.13%

3.40E-07

Fatty acid metabolic process

8

1.83%

1.30E-03

Recognition of pollen

6

1.37%

2.70E-03

Pollination

6

1.37%

2.70E-03

Cell recognition

6

1.37%

2.70E-03

Pollen-pistil interaction

6

1.37%

2.70E-03

Fatty acid biosynthetic process

7

1.60%

2.80E-03

Reproductive cellular process

6

1.37%

2.90E-03

Regulation of transcription

30

6.85%

1.10E-02