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Table 1 Repeat content of the yellowtail BESs

From: Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata

 

Number of elements

Length occupied (bp)

% of sequence

Retroelements

284

60380

1.96

  SINEs:

57

6098

0.20

  Penelope

6

1229

0.04

  LINEs:

124

28193

0.92

   L2/CR1/Rex

81

16689

0.54

   R1/LOA/Jockey

2

112

0.00

   R2/R4/NeSL

7

1703

0.06

   RTE/Bov-B

24

6124

0.20

   L1/01 N4

6

2453

0.08

  LTR elements:

103

26089

0.85

   BEL/Pao

19

9346

0.30

   Ty1/Copia

1

629

0.02

   Gypsy/DIRS1

65

14242

0.46

   Retroviral

4

881

0.03

DNA transposons

281

40242

1.31

  hobo-Activator

73

5609

0.18

  Tc1-IS630-Pogo

96

20720

0.67

  PiggyBac

13

1887

0.06

  Tourist/Harbinger

11

1349

0.04

Unclassified:

15

1165

0.04

Total interspersed repeats:

 

101787

3.31

Small RNA:

69

21563

0.70

Satellites:

12

1797

0.06

Simple repeats:

1842

76925

2.50

Low complexity:

237

11293

0.37