Skip to main content

Table 1 Primer sequence for detection of STEC serotgroups and antibiotic resistance genes

From: Virulence factors, serogroups and antimicrobial resistance properties of Escherichia coli strains in fermented dairy products

Primer name

Sequence

Size of product (bp)

Reference

O26-F

(F) CAGAATGGTTATGCTACTGT

423

[34]

O26-R

(R) CTTACATTTGTTTTCGGCATC

O103-F

(F) TTGGAGCGTTAACTGGACCT

321

[34]

O103-R

(R) GCTCCCGAGCACGTATAAG

O111-F

(F) TAGAGAAATTATCAAGTTAGTTCC

406

[34]

O111-R

(R) ATAGTTATGAACATCTTGTTTAGC

O145-F

(F) CCATCAACAGATTTAGGAGTGT

609

[34]

O145-R

(R) TTCTACCGCGAATCTATC

O157-F

(F) CGGACATCCATGTGATATGG

259

[34]

O157-R

(R) TTGCCTATGTACAGCTAATCC

O45-F

(F) CCGGGTTTCGATTTGTGAAGGTTG

527

[35]

O45-R

(R) CACAACAGCCACTACTAGGCAGAA

O91-F

(F) GCTGACCTTCATGATCTGTTGA

291

[36]

O91-R

(R) TAATTTAACCCGTAGAATCGCTGC

O113-F

(F) GGGTTAGATGGAGCGCTATTGAGA

771

[37]

O113-R

(R) AGGTCACCCTCTGAATTATGGCAG

O121-F

(F) TGGCTAGTGGCATTCTGATG

322

[38]

O121-R

(R) TGATACTTTAGCCGCCCTTG

O128-F

(F) GCTTTCTGCCGATATTTGGC

289

[39]

O128-R

(R) CCGACGGACTGATGCCGGTGATT

aadA1

(F) TATCCAGCTAAGCGCGAACT

58

[40]

(R) ATTTGCCGACTACCTTGGTC

tetA

(F) GGTTCACTCGAACGACGTCA

57

[40]

(R) CTGTCCGACAAGTTGCATGA

tetB

(F) CCTCAGCTTCTCAACGCGTG

56

[40]

(R) GCACCTTGCTGATGACTCTT

dfrA1

(F) GGAGTGCCAAAGGTGAACAGC

45

[41]

(R) GAGGCGAAGTCTTGGGTAAAAAC

qnr

(F) GGGTATGGATATTATTGATAAAG

50

[20]

(R) CTAATCCGGCAGCACTATTTA

aac (3)-IV

(F) CTTCAGGATGGCAAGTTGGT

55

[42]

(R) TCATCTCGTTCTCCGCTCAT

Sul1

(F) TTCGGCATTCTGAATCTCAC

47

[42]

(R) ATGATCTAACCCTCGGTCTC

blaSHV

(F) TCGCCTGTGTATTATCTCCC

52

[42]

(R) CGCAGATAAATCACCACAATG

CITM

(F) TGGCCAGAACTGACAGGCAAA

47

[42]

(R) TTTCTCCTGAACGTGGCTGGC

ereA

(F) GCCGGTGCTCATGAACTTGAG

52

[42]

(R) CGACTCTATTCGATCAGAGGC

cat1

(F) AGTTGCTCAATGTACCTATAACC

55

[42]

(R) TTGTAATTCATTAAGCATTCTGCC

cmlA

(F) CCGCCACGGTGTTGTTGTTATC

55

[42]

(R) CACCTTGCCTGCCCATCATTAG