Skip to main content

Table 1 Summary of RNAz scans of predicted structured regions in influenza B and C

From: Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C

 

Segment

Protein codeda

Region

z-scoreb

SCIb

p-classb

Influenza B

8

NS1, NEP

30–220

−1.44 (−2.49)

0.78 (0.86)

0.30 (0.94)

   

450–620

−2.27 (−3.29)

0.83 (0.91)

0.81 (0.99)

   

720–840

−0.98

0.94

0.37

 

7

M1, BM2

0–170

−2.12 (−2.63)

0.66 (0.78)

0.28 (0.56)

 

5

NP

1040–1160

−2.29

0.86

0.93

 

4

HA

0–160

−2.22 (−3.21)

0.78 (0.87)

0.76 (0.96)

   

780–950

−0.81 (−1.4)

0.80 (0.89)

0.20 (0.67)

 

3

PA

630–750

−2.19

0.91

0.94

   

1870–1990

−2.25

0.66

0.31

   

2010–2130

−0.85

0.96

0.46

 

2

PB1

650–770

−1.67

0.81

0.39

   

1100–1220

−0.57

0.97

0.31

 

1

PB2

210–350

−2.82 (−3.12)

0.68 (0.69)

0.85 (0.94)

   

670–810

−1.49 (−1.85)

0.83 (0.86)

0.38 (0.62)

   

1320–1450

−2.50 (−2.51)

0.76 (0.81)

0.77 (0.91)

Influenza C

7

NS1, NEP

190–400

−2.16 (−3.55)

0.70 (0.82)

0.41 (0.99)

   

640–800

−1.39 (−2.04)

0.83 (0.87)

0.31 (0.79)

 

6

M1, CM2

0–160

−2.12 (−2.87)

0.86 (0.91)

0.72 (0.96)

   

160–310

−1.13 (−1.36)

0.92 (0.93)

0.33 (0.54)

   

350–470

−0.68

0.99

0.37

   

450–680

−1.54 (−2.65)

0.96 (0.99)

0.65 (0.98)

   

670–790

−1.05

0.97

0.54

   

990–1133

−0.97 (−1.19)

0.98

0.54 (0.71)

  1. aProteins coded via splicing are italicized.
  2. bAverage values for overlapping windows with p-class <0.3. When the region is defined by more than one 120 nt window and the most favorable value for a 120 nt window differs from the average value of overlapping windows, it is presented in parentheses.