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Table 3 Comparison of the alignment-free distances and the benchmark co-phylog distance for 29 Escherichia/Shigella genomes

From: Comparison of next-generation sequencing samples using compression-based distances and its application to phylogenetic reconstruction

 

d NCD

d

d CDM

CVTree(k= 9)

CVTree(k= 15)

CVTree(k= 21)

d 2 S (k=8)

Symmetric difference

16

14

12

20

20

16

24

Distance correlation

0.97

0.95

0.99

0.80

0.79

0.80

0.20

  1. The two smallest tree symmetric differences and the two highest correlation coefficients are highlighted in boldface.