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Table 3 Comparison of the alignment-free distances and the benchmark co-phylog distance for 29 Escherichia/Shigella genomes

From: Comparison of next-generation sequencing samples using compression-based distances and its application to phylogenetic reconstruction

  d NCD d d CDM CVTree(k= 9) CVTree(k= 15) CVTree(k= 21) d 2 S (k=8)
Symmetric difference 16 14 12 20 20 16 24
Distance correlation 0.97 0.95 0.99 0.80 0.79 0.80 0.20
  1. The two smallest tree symmetric differences and the two highest correlation coefficients are highlighted in boldface.