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Table 1 Set of the E. coli RNA MTases used as bait in this study

From: Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases

Name

Alternative Name(s)

Substrate

Modification

MTase FamilyA

Uniprot

Reference

RlmA

RrmA, YebH

23S rRNA

m1G745

Class I (RFM)

P36999

[39]

RlmB

YfjH

23S rRNA

Gm2251

Class IV (SPOUT)

P63177

[40]

RlmC

RumB, YbjF

23S rRNA

m5U747

Class I (RFM)

P75817

[41]

RlmD

RumA, YgcA

23S rRNA

m5U1939

Class I (RMF)

P55135

[42]

RlmE

FtsJ, MrsF, RrmJ

23S rRNA

Um2552

Class IV (SPOUT)

P0C0R7

[43]

RlmF

YbiN

23S rRNA

m6A1618

Class I (RFM)

P75782

[44]

RlmG

YgjO

23S rRNA

m2G1835

Class I (RFM)

P42596

[45]

RlmH

YbeA

23S rRNA

m3Ψ1915

Class IV (SPOUT)

P0A8I8

[44]

RlmI

YccW

23S rRNA

m5C1962

Class I (RFM)

P75876

[46]

RlmJ

YhiR

23S rRNA

m6A2030

Class I (RFM)

P37634

[34]

RlmK/L*

YcbY

23S rRNA

m7G2069 / m2G2445

Class I (RFM)

P75864

[47–49]

RlmM

YgdE

23S rRNA

Cm2498

Class I (RFM)

P0ADR6

[50]

RlmN

YfgB

23S rRNA / tRNAs

m2A2503 / m2A37

Radical SAM

P36979

[7, 51]

RsmA

KsgA

16S rRNA

m62A1518 / m62A1519

Class I (RFM)

P06992

[52]

RsmB

RrmB, YhdB, Sun

16S rRNA

m5C967

Class I (RFM)

P36929

[53, 54]

RsmC

YjjT

16S rRNA

m2G1207

Class I (RFM)

P39406

[55]

RsmD

YhhF

16S rRNA

m2G966

Class I (RFM)

P0ADX9

[56]

RsmE

YggJ

16S rRNA

m3U1498

Class IV (SPOUT)

P0AGL7

[57]

RsmF

YebU

16S rRNA

m5C1407

Class I (RFM)

P76273

[58]

RsmG

GidB

16S rRNA

m7G527

Class I (RFM)

P0A6U5

[27]

RsmH

MraW, YabC

16S rRNA

m4C1402

Class I (RFM)

P60390

[18]

RsmI

YraL

16S rRNA

Cm1402

Class I (RFM)

P67087

[18]

RsmJ

YhiQ

16S rRNA

m2G1516

Class I (RFM)

P68567

[59]

TrmA

RumT

tRNAs / tmRNAs

m5U54 / m5U341

Class I (RFM)

P23003

[9, 60]

TrmB

YggH

tRNAs

m7G46

Class I (RFM)

P0A8I5

[61]

TrmD

TrmD

tRNAs

m1G37

Class IV (SPOUT )

P0A873

[62]

TrmH

SpoU

tRNAs

Gm18

Class IV (SPOUT )

P0AGJ2

[63]

TrmJ

YfhQ

tRNAs

Um32 / Cm32

Class IV (SPOUT)

P0AE01

[64]

TrmL

YibK

tRNAs

Um34 / Cm34

Class IV (SPOUT)

P0AGJ7

[65]

TrmN6

YfiC

tRNAs

m6A37

Class I (RFM)

P31825

[66]

MnmCB

YfcK, TrmC

tRNAs

mnm5U

Class I (RFM)

P77182

[67, 68]

CmoA

YecO

tRNAs

cmo5U

Class I (RFM)

P76290

[69]

CmoB

YecP

tRNAs

cmo5U

Class I (RFM)

P76291

[69]

  1. *We split this fused-domain MTase to assume independent MTases during the homolog search. A) Classification according to amino acid motifs and published structure when available; RFM = Rossmann Fold Methyltransferase; SPOUT = Similar to the SpoU MTase structure. B) Only refers to the N-terminal MTase domain of the bi-functional MnmC protein.
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BMC Research Notes

ISSN: 1756-0500

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