From: Suffix tree searcher: exploration of common substrings in large DNA sequence sets
Input pattern | Interpretation | Comment |
---|---|---|
acgcgaatccgt | Search all input sequences for pattern | Multiple patterns are separated with a ";" |
ac*cg*atccgt | Search all input sequences for pattern. "*" represents a wildcard, which matches all 4 nucleotides | Multiple patterns are separated with a ";" |
"2, 12961, 12" | Search input 2 for a 12Â nt pattern beginning at position 12961 | Multiple patterns are separated with a ";". Tandem repeats of the pattern may be matched if they exist. |