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Table 1 Assembly quality metrics

From: Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of De novo assemblers

Assembly Statistic

Assembler

 

Oases

Trinity

Velvet

Geneious

Number of contigs

3 090

10 886

78 306

112 762

Average contig length

175

293

111

140

Longest contig

1 700

1 618

458

711

N50

149

258

107

124

  1. Assembly statistics for the transcriptomes produced by the four different short read de novo assemblers.