Enzyme combinations | CpGs covered | Fragments generated | Genomic CpG coverage (%) | CpG/fragment ratio | Read coverage |
---|---|---|---|---|---|
I. Homo sapiens | |||||
HaeIII | 6,755,710 | 4,521,945 | 25.0 | 1.49 | 33.2× |
MspI HaeIII | 8,703,801 | 5,613,529 | 32.2 | 1.55 | 26.7× |
MspI AluI | 10,642,461 | 9,505,806 | 39.4 | 1.12 | 15.8× |
MspI HpyCH4V | 11,443,197 | 10,567,403 | 42.3 | 1.08 | 14.2× |
MspI BfaI HaeIII | 12,111,370 | 11,319,689 | 44.8 | 1.07 | 13.3× |
MspI AluI HaeIII | 13,769,398 | 14,064,014 | 50.9 | 0.98 | 10.7× |
AluI HaeIII | 13,957,636 | 13,633,940 | 51.6 | 1.02 | 11.0× |
HaeIII HpyCH4V | 14,395,279 | 14,532,544 | 53.2 | 0.99 | 10.3× |
II. Rattus novergicus | |||||
HaeIII | 4,292,555 | 3,206,578 | 17.9 | 1.34 | 46.8× |
MspI HaeIII | 5,859,114 | 4,154,939 | 24.5 | 1.41 | 36.1× |
MspI AluI | 9,423,433 | 8,934,858 | 39.4 | 1.05 | 16.8× |
MspI BfaI HaeIII | 9,643,490 | 9,579,581 | 40.3 | 1.01 | 15.7× |
HaeIII HpyCH4V | 10,937,751 | 11,405,956 | 45.7 | 0.96 | 13.2× |
MspI AluI BfaI | 11,837,958 | 13,122,827 | 49.5 | 0.90 | 11.4× |
MspI BfaI HpyCH4V | 12,246,891 | 13,543,165 | 51.2 | 0.90 | 11.1× |
AluI HpyCH4V | 12,674,196 | 14,657,325 | 53.0 | 0.86 | 10.2× |
III. Mus musculus | |||||
MspI HaeIII | 5,708,849 | 4,591,528 | 26.1 | 1.24 | 32.7× |
MspI AluI | 8,524,374 | 9,393,465 | 39.0 | 0.91 | 16.0× |
MspI BfaI HaeIII | 9,221,025 | 10,607,497 | 42.2 | 0.87 | 14.1× |
HaeIII HpyCH4V | 10,164,473 | 12,447,516 | 46.5 | 0.82 | 12.1× |
AluI HaeIII | 10,229,379 | 12,588,763 | 46.8 | 0.81 | 11.9× |
MspI AluI HaeIII | 10,706,690 | 13,170,774 | 49.0 | 0.81 | 11.4× |
MspI HaeIII HpyCH4V | 10,759,254 | 13,095,284 | 49.2 | 0.82 | 11.5× |
MspI BfaI HpyCH4V | 11,347,760 | 14,601,495 | 51.9 | 0.78 | 10.3× |