From: SNPest: a probabilistic graphical model for estimating genotypes
 | SNPest, standard model | SNPest, damage model | ||||||
---|---|---|---|---|---|---|---|---|
 | Bowtie2 | BWA-PSSM | Bowtie2 | BWA-PSSM | ||||
Depth | All | QC | All | QC | All | QC | All | QC |
5 | 198 | 11 | 763 | 80 | 66 | 0 | 236 | 4 |
10 | 55 | 0 | 184 | 0 | 51 | 0 | 154 | 0 |
20 | 55 | 0 | 183 | 0 | 51 | 0 | 154 | 0 |
30 | 55 | 0 | 183 | 0 | 51 | 0 | 154 | 0 |
40 | 55 | 0 | 183 | 0 | 51 | 0 | 154 | 0 |
50 | 55 | 0 | 183 | 0 | 51 | 0 | 154 | 0 |
60 | 55 | 0 | 183 | 0 | 51 | 0 | 154 | 0 |