Table 1 Prediction results for DNA-binding domains on positive data
From: A property-based analysis of human transcription factors
Level | Unit | NPfam | Npredicted | TP | FP | TN | FN | Sn | PPV |
|---|---|---|---|---|---|---|---|---|---|
Protein | proteins | 907 | 776 | 718 | - | - | 189 | 79.16 | - |
Domain | domains | 70 | 46 | 40 | - | - | 30 | 57.14 | - |
Domain | occurrences | 1159 | 872 | 863 | 519 | - | 296 | 74.46 | 62.45 |
Nucleotide total | nucleotides | 69320 | 43326 | 42783 | 16899 | - | 26537 | 61.72 | 71.68 |
Nucleotide average | nucleotides | 59 | 49 | 49 | 32 | - | 89 | 35.51 | 60.49 |