Table 2 Characterization of new microsatellite-enriched libraries from U. humidicola
Library | Lb-1 | Lb-2 | |
|---|---|---|---|
Total clones sequenced | 86.0 | 80.0 | |
Sequences containing microsatellites (%) | 79.0 | 61.2 | |
Total number of SSRs identified | 106.0 | 77.0 | |
Type of repeat (%) | |||
By nucleotide string | Mono-nucleotides | 12.7 | 6.5 |
Di-nucleotides | 76.4 | 72.7 | |
Tri-nucleotides | 1.9 | 5.2 | |
Tetra-nucleotides | 5.6 | 11.6 | |
Penta-nucleotides | 2.8 | 3.9 | |
Hexa-nucleotides | 0.9 | 0.0 | |
By form | Perfect | 79.1 | 80.6 |
Imperfect | 9.3 | 1.6 | |
Perfect Compound | 5.8 | 9.7 | |
Imperfect Compound | 5.8 | 8.1 | |