Table 2 List of SNPs showing differential expression changes based on the SNP groupings
From: Identification of regulatory SNPs associated with genetic modifications in lung adenocarcinoma
Genetic modification | Gene symbol | SNP | Concordance a |
|---|---|---|---|
Copy number variations | Â | Â | Â |
  Amplification | KDM5B | rs3088324 | + |
| Â | SSBP2 | rs4703852 | + |
| Â | SMYD3 | rs4654180 | + |
| Â | TRPC7 | rs4976373/rs7727634 | - |
| Â | SEMA6A | rs11951689 | + |
  Deletion | RNF217 | rs11966226cu | + |
| Â | PCDH8 | rs9596724 | - |
| Â | NAMPT | rs41799 | - |
Methylation alterations | Â | Â | Â |
  Hypermethylation | MAGI2 | rs17150656 | + |
| Â | MYOM2 | rs6558659/rs2405327 | - |
| Â | FGF12 | rs9881554 | - |
  Hypomethylation | --- | --- | --- |