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Table 1 Characterization and levels of variability at 24 microsatellite loci of Tetranychus urticae

From: Isolation, characterization and PCR multiplexing of microsatellite loci for a mite crop pest, Tetranychus urticae (Acari: Tetranychidae)

Locus

Motif

Primer sequence (5′–3′)

Scaffold number

Number of set

Dye

GenBank accession No

Size range

Na

Ho

He

TuLS14

(ATG)7

F: GCAAATGAAGCTTACCAATTA

17

2

VIC

KJ545959

191–210

7

0.2

0.60

R: TAAAGGTTTGGCAGTTCAGT

TuLS16

(CAT)10

F: AATTGCTTATCACCCACATC

21

2

PET

KJ545960

186–228

16

0.39

0.79

R: TTAGTTGCTTGTTGAGCAGA

TuLS17

(ATG)6

F: TCTTCGTTCGATAGCTTTTC

23

2

FAM

KJ545961

192–207

6

0.03

0.55

R: TCCTCAGGTATATCAGGTGG

TuLS19

(TG)6

F CAAAAGTTGGACATTTCAGG

24

2

NED

KJ545962

195–211

8

0.28

0.71

R: TCCTTCCACAGTCAATATCC

TuLS20

(TTG)6

F: AAGCTGGATTCATAGAAGCA

27

1

PET

KJ545963

212–218

3

0.16

0.38

R: AAATTAATTCAGCCTCGTCA

TuLS22

(TG)6

F: GCAATCGTTTGTTTTCATTT

33

1

NED

KJ545964

191–203

5

0.17

0.43

R: TCACAATTGATGATGCTTGT

TuLS23

(TAA)6

F: TGGTAACTGCATCAACCATA

34

3

PET

KJ545965

193–202

4

0.21

0.66

R: AAGATTCGGGAAGATTAAGG

TuLS24

(GA)7

F: TGTTGTATGGGAATAAGACAAG

36

3

VIC

KJ545966

225–238

10

0.26

0.69

R: GTGATTGGCCTGATAATGTT

TuLS35

(TG)8

F: GGAAACGTATCACAATTTGG

100

2

FAM

KJ545967

204–292

8

0.17

0.70

R AGAATCTTTTGTTGCTTCCA

TuLS38

(CAA)6

F: CAACACCAATCACAAAATGA

15

1

NED

KJ545968

239–253

5

0.03

0.13

R: GTTGGACTTGGTGAATCAGT

TuLS39

(AGC)6

F: ACATTATCGTTCGGTTCATC

17

3

VIC

KJ545969

270–293

7

0.04

0.15

R: CTTTGTTCCCTTTTATGTGC

TuLS41

(CAT)6

F: GAATGAAGATTGGTGGGTTA

23

3

PET

KJ545970

242–261

8

0.27

0.53

R: TCAAGATTTTGGAATCAGAGA

TuLS42

(ATC)5

F: TTCCTCTTCCTTGTCTTTCA

27

3

FAM

KJ545971

230–269

10

0.07

0.52

R: CATCATCTTGTTGTTTGTGC

TuLS43

(GAT)5

F: AATGGAGGTATGGATGACG

28

3

NED

KJ545972

262–277

4

0.02

0.14

R: AAAGCTGCTGAAAGTCACTC

Tupm07*

(CT)10

F: CCAATCACTGTGTTGATCGC

13

3

NED

na

79–94

10

0.43

0.71

R: GGCTGGTTTCTCTTTCTCCC

Tupm08*

(AG)10

F AAGCAACAGTTTAGGATGAGAAGG

16

2

PET

na

78–92

8

0.33

0.81

R: AGTCCATCTTCCTCTTGTCTTCTAGT

Tupm09*

(CT)10

F: TGAAAAGCGAAACATTGATTCTA

6

3

FAM

na

74–91

8

0.31

0.80

R: GAAATGTCGAGTTGTCAGGG

TuCA12*

(CA)7

F: GATTTGTGGTCGTGGTTTTC

9

1

FAM

AB263078

177–287

15

0.23

0.78

R: GATCAACTCAAAAGGATAACGTTG

TuCA83*

(GT)6

F: CAGGGTGAAACTTAGATACC

2

1

VIC

AB263081

201–219

11

0.24

0.74

R: CAATTTTCCCTCTACATCTC

TuCA96*

(TG)7

F: ATGGATTGTCACCGATTTCA

11

1

PET

AB263082

109–218

4

0.10

0.60

R: CTGAAGTTTACTTGCTATAGTC

TuCT09*

(CT)15

F: GATCACTTTTTCATGTTATTCTG

na

2

FAM

AB263084

108–118

7

0.08

0.53

R: CTTGGAATGAACTTTAGCAC

TuCT67*

(CT)9

F: CCATCATCTTCATCATTCTTCACC

9

2

NED

AB263090

88–112

15

0.21

0.73

R: TAGAACAGTCAAGCAAAAAGAGTC

TuCT73*

(CA)7

F: CGATGTGGGTGGTAAGCATG

18

1

VIC

AB263091

106–214

9

0.25

0.69

R: ACGATGATATTGATGATGAGCG

Tu35b*

(TGA)8

F: CTTCCCGAAGGCTGTTGATA

1

1

NED

AJ419832

91–113

6

0.22

0.40

R: AATGGAATGAGTTATCGTTGGG

  1. The scaffold number is given as indicated in the annotated whole genome of T. urticae and can be retrieved at ORCAE [16].“Na” is the number of alleles. Observed heterozygosities (Ho) Expected heterozygosities (He) calculated with ADEgenet R package [17].
  2. * Loci published previously.