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Table 1 Expression analysis for OMIM® genes that aligned to X. tropicalis genome scaffolds and X. laevis PSIDs

From: RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance

Category

Deafness

Vestibular

Both

Total

OMIM® genes

229

53

70

352

X. tropicalis genome

 OMIM® genes that mapped to Xt genome scaffolds and met alignment criteria

204

51

67

322a

 OMIM® genes that mapped to Xt genome scaffolds, met alignment criteria, and met RNA-Seq expression criteria

161

29

51

241

Affymetrix Xl-PSIDs

 OMIM® genes that mapped to Xl-PSID genes that met alignment criteria

154

40

40

234a

 OMIM® genes that mapped to Xl-PSID genes that met alignment and expression criteria

96

12

18

126b

  1. a190 OMIM genes met the alignment criteria for both technologies (see Fig. 2)
  2. bThis group includes 18 OMIM® genes that were not detected by RNA-Seq