Skip to main content

Table 1 Summarized TCGA breast cancer biological validation

From: Differential correlation for sequencing data

Treatment

Mean rank

Median rank

Mean q value/FDR

Correlation method comparison

 Spearman

89

56

0.0150

 SparCC

543

387

0.0240

 Pearson

531

512

0.0600

 BWMC

294

275

0.0530

 DiffCorr

502

395

0.2100

3 components vs. 5 components

 3

89

56

0.0150

 5

683

392

0.0007

Standard EM vs. subsampling EM

 Standard EM

89

56

0.0150

 Subsampling EM

92

44

0.0048

  1. Ranks are summarized by mean and median, and q values/FDR are summarized by mean. Values here are based on values in Additional file 1: Table S1