Skip to main content

Table 1 Taxonomy of treeman functions

From: treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

Method set

Description

Examples

get

Retrieve specific information about parts of a tree, often nodes

getNdAge, getPrnt, getNdKids, getNdLng, getNdPrid, getNdPtid, getPath, getSubtree

calc

Calculate tree statistics and tree associated information

calcDstMtrx, calcTrDst, calcPhyDv, calcFrPrp

set

Set node or overall tree values

setNdSpn, setAge, setPD, setRoot, setTol

manip

Change tree structure by adding or removing tips and nodes

addTip, rmTip, pinTip