From: A quantitative and qualitative comparison of illumina MiSeq and 454 amplicon sequencing for genotyping the highly polymorphic major histocompatibility complex (MHC) in a non-model species
Mean (±se) reads per amplicon
MiSeq
454
‘Good’ amplicons
2818 (62)
63 (2)
‘Poor’ amplicons
2427 (135)
53 (2)